Transcript: lnc-PDGFA-6:4

Basic information

LNCipedia transcript ID: lnc-PDGFA-6:4 
LNCipedia gene ID: lnc-PDGFA-6
Location (hg38): chr7:19757-35457
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1005 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000480075; ENST00000480075.1; AC093627.6-002; OTTHUMT00000322482.1; NONHSAT118562
Alternative gene names: ENSG00000244758; AC093627.6; ENSG00000244758.1; OTTHUMG00000151404.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 60.9483 coding 
CPAT coding probability 57.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDGFA-6:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC145676.2.1-4:3
3.1 lnc-AC145676.2.1-6:3
4.0 lnc-AC145676.2.1-6:3
4.1 lnc-AC145676.2.1-6:3
5.0 lnc-AC145676.2.1-6:3
5.1 lnc-PRKAR1B-26:4
5.2 lnc-PDGFA-6:4