Transcript: lnc-PFKP-16:10

Basic information

LNCipedia transcript ID: lnc-PFKP-16:10 
LNCipedia gene ID: lnc-PFKP-16
Location (hg38): chr10:3932704-3935812
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 403 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000450152; ENST00000450152.1; RP11-464C19.3-002; OTTHUMT00000046503.1
Alternative gene names: ENSG00000226005; RP11-464C19.3; ENSG00000226005.1; OTTHUMG00000017569.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -858.0206 non-coding 
CPAT coding probability 11.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PFKP-16:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PFKP-14:1
3.1 lnc-PFKP-15:1
4.0 lnc-PFKP-16:10
4.1 lnc-PFKP-16:10
5.0 lnc-PFKP-16:10
5.1 lnc-NPY4R2-502:11
5.2 lnc-PFKP-16:10