Transcript: lnc-PGPEP1L-60:1

Basic information

LNCipedia transcript ID: lnc-PGPEP1L-60:1 
LNCipedia gene ID: lnc-PGPEP1L-60
Location (hg38): chr15:96049275-96064426
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000558860.1; RP11-236L14.1-001; OTTHUMT00000415307.1; NONHSAT050216
Alternative gene names: ENSG00000259702.1; RP11-236L14.1; OTTHUMG00000171837.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.8825 non-coding 
CPAT coding probability 2.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGPEP1L-60:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC016251.1-4:1
4.0 lnc-AC016251.1-4:1
4.1 lnc-AC016251.1-4:1
5.0 lnc-AC016251.1-4:1
5.1 lnc-CIB1-60:1
5.2 lnc-PGPEP1L-60:1