Transcript: lnc-PGPEP1L-60:3

Basic information

LNCipedia transcript ID: lnc-PGPEP1L-60:3 
LNCipedia gene ID: lnc-PGPEP1L-60
Location (hg38): chr15:96028089-96046930
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000561051.1; RP11-4G2.1-001; OTTHUMT00000415306.1; NONHSAT050215
Alternative gene names: ENSG00000259348.1; RP11-4G2.1; OTTHUMG00000171836.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.9318 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGPEP1L-60:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC016251.1-5:1
4.0 lnc-AC016251.1-5:1
4.1 lnc-AC016251.1-5:1
5.0 lnc-AC016251.1-5:1
5.1 lnc-CIB1-60:3
5.2 lnc-PGPEP1L-60:3