Transcript: lnc-PIEZO2-18:3

Basic information

LNCipedia transcript ID: lnc-PIEZO2-18:3 
LNCipedia gene ID: lnc-PIEZO2-18
Location (hg38): chr18:11366977-11378346
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 678 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026674; NONHSAT057296
Alternative gene names: XLOC_012768; linc-FAM38B-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.9778 non-coding 
CPAT coding probability 17.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIEZO2-18:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PIEZO2-3:1
3.1 lnc-PIEZO2-3:2
4.0 lnc-RP11-677O4.1.1-10:3
4.1 lnc-RP11-677O4.1.1-10:3
5.0 lnc-RP11-677O4.1.1-10:3
5.1 lnc-SMAD2-284:3
5.2 lnc-PIEZO2-18:3