Transcript: lnc-PLCB1-1:1

Basic information

LNCipedia transcript ID: lnc-PLCB1-1:1 
LNCipedia gene ID: lnc-PLCB1-1
Ensembl Gene ID: ENSG00000229766
Ensembl Transcript ID: ENST00000457707
Location (hg38): chr20:8019902-8027956
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1929 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457707; ENST00000457707.1; RP5-971N18.3-001; OTTHUMT00000077927.1; NONHSAT078550
Alternative gene names: ENSG00000229766; RP5-971N18.3; ENSG00000229766.1; OTTHUMG00000031842.1; ENSG00000229766.2; ENSG00000229766.6; AL021396.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.1168 non-coding 
CPAT coding probability 3.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLCB1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLCB1-1:1
3.1 lnc-PLCB1-1:1
4.0 lnc-PLCB1-1:1
4.1 lnc-PLCB1-1:1
5.0 lnc-PLCB1-1:1
5.1 lnc-LAMP5-7:4
5.2 lnc-PLCB1-1:1