Transcript: lnc-PPIAL4A-2:11

Basic information

LNCipedia transcript ID: lnc-PPIAL4A-2:11 
LNCipedia gene ID: lnc-PPIAL4A-2
Location (hg38): chr1:120942412-120976686
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 894 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000444499.1; AL592284.1-010; OTTHUMT00000038346.1; NONHSAT005795
Alternative gene names: ENSG00000236943.1; AL592284.1; OTTHUMG00000013668.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 48.0806 non-coding 
CPAT coding probability 52.51% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PPIAL4A-2:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPIAL4B-2:13
4.0 lnc-PPIAL4B-2:13
4.1 lnc-PPIAL4B-2:13
5.0 lnc-PPIAL4B-2:13
5.1 lnc-PPIAL4A-2:3
5.2 lnc-PPIAL4A-2:11