Transcript: lnc-PPIAL4A-2:12

Basic information

LNCipedia transcript ID: lnc-PPIAL4A-2:12 
LNCipedia gene ID: lnc-PPIAL4A-2
Location (hg38): chr1:120942412-120977578
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 660 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000454100.1; AL592284.1-009; OTTHUMT00000038345.1
Alternative gene names: ENSG00000236943.1; AL592284.1; OTTHUMG00000013668.2; ENSG00000236943.2; RP11-640M9.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 93.9279 coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PPIAL4A-2:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPIAL4B-2:12
4.0 lnc-PPIAL4B-2:12
4.1 lnc-PPIAL4B-2:12
5.0 lnc-PPIAL4B-2:12
5.1 lnc-PPIAL4A-2:4
5.2 lnc-PPIAL4A-2:12