Transcript: lnc-PPP4R1-15:1

Basic information

LNCipedia transcript ID: lnc-PPP4R1-15:1 
LNCipedia gene ID: lnc-PPP4R1-15
Location (hg38): chr18:9281111-9324470
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 736 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_1521_chr18:9281108-9324468_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.3413 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP4R1-15:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP4R1-15:1
4.0 lnc-PPP4R1-15:1
4.1 lnc-PPP4R1-15:1
5.0 lnc-PPP4R1-15:1
5.1 lnc-SMAD2-312:1
5.2 lnc-PPP4R1-15:1