Transcript: lnc-PPP4R3C-2:13

Basic information

LNCipedia transcript ID: lnc-PPP4R3C-2:13 
LNCipedia gene ID: lnc-PPP4R3C-2
Ensembl Gene ID: ENSG00000242021
Ensembl Transcript ID: ENST00000436019
Location (hg38): chrX:27128805-27176298
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 673 bp
Exons: 6
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436019.2
Alternative gene names: ENSG00000242021.2; RP11-268G12.3; AC112493.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.0833 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP4R3C-2:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DCAF8L1-2:6
4.0 lnc-DCAF8L1-2:6
4.1 lnc-DCAF8L1-2:6
5.0 lnc-DCAF8L1-2:6
5.1 lnc-PCSK1N-120:13
5.2 lnc-PPP4R3C-2:13