Transcript: lnc-PRMT8-2:1

Basic information

LNCipedia transcript ID: lnc-PRMT8-2:1 
LNCipedia gene ID: lnc-PRMT8-2
Ensembl Gene ID: ENSG00000256862
Ensembl Transcript ID: ENST00000537149
Location (hg38): chr12:3871734-3910338
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 678 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000537149.1; RP11-664D1.1-002; OTTHUMT00000398281.1
Alternative gene names: ENSG00000256862.1; RP11-664D1.1; OTTHUMG00000168120.1; AC005842.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.6365 non-coding 
CPAT coding probability 7.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRMT8-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRMT8-2:1
4.0 lnc-PRMT8-2:1
4.1 lnc-PRMT8-2:1
5.0 lnc-PRMT8-2:1
5.1 lnc-CLEC4D-111:2
5.2 lnc-PRMT8-2:1