Transcript: lnc-PSMD7-5:1

Basic information

LNCipedia transcript ID: lnc-PSMD7-5:1 
LNCipedia gene ID: lnc-PSMD7-5
Ensembl Gene ID: ENSG00000260848
Ensembl Transcript ID: ENST00000567227
Location (hg38): chr16:73543941-73558522
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 532 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567227.1; CTD-2009A10.1-001; OTTHUMT00000435204.1; NONHSAT143642
Alternative gene names: ENSG00000260848.1; CTD-2009A10.1; OTTHUMG00000177075.1; AC092114.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -411.7326 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMD7-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-44L9.1.1-4:1
4.0 lnc-RP11-44L9.1.1-4:1
4.1 lnc-RP11-44L9.1.1-4:1
5.0 lnc-RP11-44L9.1.1-4:1
5.1 lnc-MARVELD3-44:1
5.2 lnc-PSMD7-5:1