Transcript: lnc-RAB27B-11:1

Basic information

LNCipedia transcript ID: lnc-RAB27B-11:1 
LNCipedia gene ID: lnc-RAB27B-11
Ensembl Gene ID: ENSG00000267284
Ensembl Transcript ID: ENST00000592936
Location (hg38): chr18:55721063-55759122
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 555 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059374; ENST00000592936.1
Alternative gene names: ENSG00000267284.1; RP11-397A16.1; AC022031.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 64.1242 coding 
CPAT coding probability 8.49% non-coding 
Bazzini small ORFs 1 coding 
orfFrame7.038819249
seqAAMPRPASARARCTHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGSSL
covF1Prop0.180327869

In stringent set: no

Locus conservation

Locus conservation?
lnc-RAB27B-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR7-9:3
4.0 lnc-RAB27B-11:1
4.1 lnc-RAB27B-11:1
5.0 lnc-RAB27B-11:1
5.1 lnc-WDR7-16:1
5.2 lnc-RAB27B-11:1