Transcript: lnc-RAB27B-11:3

Basic information

LNCipedia transcript ID: lnc-RAB27B-11:3 
LNCipedia gene ID: lnc-RAB27B-11
Ensembl Gene ID: ENSG00000267284
Ensembl Transcript ID: ENST00000587346
Location (hg38): chr18:55721396-55784944
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 565 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059376; ENST00000587346.1
Alternative gene names: ENSG00000267284.1; RP11-397A16.1; AC022031.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.8112 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 1 coding 
seqAAMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGSSL
covF1Prop0.257142857
orfFrame6.726511802

In stringent set: no

Locus conservation

Locus conservation?
lnc-RAB27B-11:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR7-9:5
4.0 lnc-RAB27B-11:3
4.1 lnc-RAB27B-11:3
5.0 lnc-RAB27B-11:3
5.1 lnc-WDR7-16:3
5.2 lnc-RAB27B-11:3