Transcript: lnc-RAB3GAP2-10:1

Basic information

LNCipedia transcript ID: lnc-RAB3GAP2-10:1 
LNCipedia gene ID: lnc-RAB3GAP2-10
Location (hg38): chr1:220881155-220881423
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 269 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000095080.1|FTMT20200012215.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 354.6396 coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RAB3GAP2-10:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AC096644.1-10:1
5.0 lnc-AC096644.1-10:1
5.1 lnc-LEFTY2-70:1
5.2 lnc-RAB3GAP2-10:1