Transcript: lnc-RAB3GAP2-3:1

Basic information

LNCipedia transcript ID: lnc-RAB3GAP2-3:1 
LNCipedia gene ID: lnc-RAB3GAP2-3
Ensembl Gene ID: ENSG00000231529
Ensembl Transcript ID: ENST00000446169
Location (hg38): chr1:220485104-220487043
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 390 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000736; ENST00000446169; ENST00000446169.1; RP11-410C4.4-001; OTTHUMT00000090897.1; NONHSAT009607
Alternative gene names: XLOC_001211; linc-RAB3GAP2-2; ENSG00000231529; RP11-410C4.4; ENSG00000231529.1; OTTHUMG00000037350.1; AC096644.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -204.8041 non-coding 
CPAT coding probability 3.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAB3GAP2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC096644.1-1:1
3.1 lnc-AC096644.1-1:1
4.0 lnc-AC096644.1-1:1
4.1 lnc-AC096644.1-1:1
5.0 lnc-AC096644.1-1:1
5.1 lnc-LEFTY2-76:1
5.2 lnc-RAB3GAP2-3:1