Transcript: lnc-RAP1GDS1-3:1

Basic information

LNCipedia transcript ID: lnc-RAP1GDS1-3:1 
LNCipedia gene ID: lnc-RAP1GDS1-3
Location (hg38): chr4:98658767-98678562
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 987 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008170; NONHSAT097491
Alternative gene names: XLOC_003615; linc-METAP1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.8804 non-coding 
CPAT coding probability 13.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAP1GDS1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAP1GDS1-2:1
3.1 lnc-RAP1GDS1-3:1
4.0 lnc-RAP1GDS1-3:1
4.1 lnc-RAP1GDS1-3:1
5.0 lnc-RAP1GDS1-3:1
5.1 lnc-C4orf17-17:6
5.2 lnc-RAP1GDS1-3:1