Transcript: lnc-RAP1GDS1-3:13

Basic information

LNCipedia transcript ID: lnc-RAP1GDS1-3:13 
LNCipedia gene ID: lnc-RAP1GDS1-3
Location (hg38): chr4:98658824-98678464
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 832 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260641.1|FTMT21500022744.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -122.8804 non-coding 
CPAT coding probability 8.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAP1GDS1-3:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RAP1GDS1-3:13
5.0 lnc-RAP1GDS1-3:13
5.1 lnc-C4orf17-17:7
5.2 lnc-RAP1GDS1-3:13