Transcript: lnc-SAMD11-5:4

Basic information

LNCipedia transcript ID: lnc-SAMD11-5:4 
LNCipedia gene ID: lnc-SAMD11-5
Location (hg38): chr1:904813-905822
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272438.1|FTMT20300063662.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 44.6517 non-coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SAMD11-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SAMD11-5:4
5.0 lnc-SAMD11-5:4
5.1 lnc-VAMP3-124:3
5.2 lnc-SAMD11-5:4