Transcript: lnc-SAMD11-5:8

Basic information

LNCipedia transcript ID: lnc-SAMD11-5:8 
LNCipedia gene ID: lnc-SAMD11-5
Location (hg38): chr1:904836-916673
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1269 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272438.1|ENCT00000000072.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 44.6517 non-coding 
CPAT coding probability 4.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SAMD11-5:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SAMD11-5:8
5.0 lnc-SAMD11-5:8
5.1 lnc-VAMP3-124:8
5.2 lnc-SAMD11-5:8