Transcript: lnc-SAMSN1-3:1

Basic information

LNCipedia transcript ID: lnc-SAMSN1-3:1 
LNCipedia gene ID: lnc-SAMSN1-3
Location (hg38): chr21:14761245-14763236
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1138 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT081174
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.6958 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAMSN1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AF165138.7.1-3:3
4.0 lnc-AF165138.7.1-3:3
4.1 lnc-AF165138.7.1-3:3
5.0 lnc-AF165138.7.1-3:3
5.1 lnc-N6AMT1-108:1
5.2 lnc-SAMSN1-3:1