Transcript: lnc-SAP30-18:1

Basic information

LNCipedia transcript ID: lnc-SAP30-18:1 
LNCipedia gene ID: lnc-SAP30-18
Location (hg38): chr4:173699150-173702155
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 413 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT099301; FPKM1_group_24481_transcript_3
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -312.6384 non-coding 
CPAT coding probability 3.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAP30-18:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SAP30-18:1
4.0 lnc-SAP30-18:1
4.1 lnc-SAP30-18:1
5.0 lnc-SAP30-18:1
5.1 lnc-GALNTL6-20:1
5.2 lnc-SAP30-18:1