Transcript: lnc-SEPT7-1:14

Basic information

LNCipedia transcript ID: lnc-SEPT7-1:14 
LNCipedia gene ID: lnc-SEPT7-1
Ensembl Gene ID: ENSG00000227544
Ensembl Transcript ID: ENST00000585952
Location (hg38): chr7:35716802-35734515
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 710 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT120094; ENST00000585952.1
Alternative gene names: ENSG00000227544.4; AC018647.3; ENSG00000227544.8; AC018647.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.3198 non-coding 
CPAT coding probability 7.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEPT7-1:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEPT7-1:14
4.0 lnc-SEPT7-1:14
4.1 lnc-SEPT7-1:14
5.0 lnc-SEPT7-1:14
5.1 lnc-CCDC129-44:19
5.2 lnc-SEPT7-1:14