Transcript: lnc-SLC15A4-14:1

Basic information

LNCipedia transcript ID: lnc-SLC15A4-14:1 
LNCipedia gene ID: lnc-SLC15A4-14
Ensembl Gene ID: ENSG00000256001
Ensembl Transcript ID: ENST00000541419
Location (hg38): chr12:127145072-127146532
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 505 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000541419; ENST00000541419.1; RP11-575F12.2-001; OTTHUMT00000399831.1; NONHSAT031849
Alternative gene names: ENSG00000256001; RP11-575F12.2; ENSG00000256001.1; OTTHUMG00000168461.1; AC079949.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -191.556 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC15A4-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC15A4-14:1
3.1 lnc-SLC15A4-14:1
4.0 lnc-SLC15A4-14:1
4.1 lnc-SLC15A4-14:1
5.0 lnc-SLC15A4-14:1
5.1 lnc-DHX37-34:1
5.2 lnc-SLC15A4-14:1