Transcript: lnc-SLC24A5-1:2

Basic information

LNCipedia transcript ID: lnc-SLC24A5-1:2 
LNCipedia gene ID: lnc-SLC24A5-1
Location (hg38): chr15:47992735-48049489
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 690 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023390; NONHSAT042321
Alternative gene names: XLOC_011238; linc-SLC24A5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.2413 non-coding 
CPAT coding probability 2.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC24A5-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC24A5-1:1
3.1 lnc-SLC24A5-1:2
4.0 lnc-SLC24A5-1:2
4.1 lnc-SLC24A5-1:2
5.0 lnc-SLC24A5-1:2
5.1 lnc-CCNDBP1-61:2
5.2 lnc-SLC24A5-1:2