Transcript: lnc-SLC26A8-1:2

Basic information

LNCipedia transcript ID: lnc-SLC26A8-1:2 
LNCipedia gene ID: lnc-SLC26A8-1
Ensembl Gene ID: ENSG00000246982
Ensembl Transcript ID: ENST00000526611
Location (hg38): chr6:36146698-36197203
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 587 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526611; ENST00000526611.1; RP1-179N16.6-002; OTTHUMT00000389041.1; NONHSAT112209; ENST00000526611.5
Alternative gene names: ENSG00000246982; RP1-179N16.6; ENSG00000246982.2; OTTHUMG00000166301.1; ENSG00000246982.6; Z84485.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.6998 non-coding 
CPAT coding probability 2.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC26A8-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf222-1:2
3.1 lnc-C6orf222-1:2
4.0 lnc-C6orf222-1:2
4.1 lnc-SLC26A8-1:2
5.0 lnc-SLC26A8-1:2
5.1 lnc-CPNE5-18:2
5.2 lnc-SLC26A8-1:2