Transcript: lnc-SLC39A11-1:17

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:17 ?
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg19): chr17:70417121-70424430
Strand: -
Class: intergenic
Transcript size: 141 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000582712.1; LINC00511-008; OTTHUMT00000441425.1
Alternative gene names: ENSG00000227036.2; LINC00511; OTTHUMG00000132227.4

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score non-coding ?
CPAT coding probability 0.20% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC39A11-1:17 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -45.4
Randfold P-value: 0.57

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell reports

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
3.1 lnc-SLC39A11-1:17
4.0 lnc-SLC39A11-1:17