Transcript: lnc-SLC4A3-6:1

Basic information

LNCipedia transcript ID: lnc-SLC4A3-6:1 
LNCipedia gene ID: lnc-SLC4A3-6
Ensembl Gene ID: ENSG00000235337
Ensembl Transcript ID: ENST00000438633
Location (hg38): chr2:220127546-220212491
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 347 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438633; ENST00000438633.1; AC114765.2-001; OTTHUMT00000332707.1; NONHSAT077081
Alternative gene names: ENSG00000235337; AC114765.2; ENSG00000235337.1; OTTHUMG00000153854.1; AC093083.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.7941 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC4A3-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC4A3-5:1
3.1 lnc-SLC4A3-6:1
4.0 lnc-SLC4A3-6:1
4.1 lnc-SLC4A3-6:1
5.0 lnc-SLC4A3-6:1
5.1 lnc-MOGAT1-40:1
5.2 lnc-SLC4A3-6:1