Transcript: lnc-SLC6A12-2:1

Basic information

LNCipedia transcript ID: lnc-SLC6A12-2:1 
LNCipedia gene ID: lnc-SLC6A12-2
Ensembl Gene ID: ENSG00000256694
Ensembl Transcript ID: ENST00000540136
Location (hg38): chr12:164664-166321
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1101 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540136.1; RP11-598F7.5-001; OTTHUMT00000397389.1; NONHSAT025303
Alternative gene names: ENSG00000256694.1; RP11-598F7.5; OTTHUMG00000167978.1; AC026369.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 246.2439 coding 
CPAT coding probability 55.49% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC6A12-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC6A12-2:1
4.0 lnc-SLC6A12-2:1
4.1 lnc-SLC6A12-2:1
5.0 lnc-SLC6A12-2:1
5.1 lnc-CHD4-127:9
5.2 lnc-SLC6A12-2:1