Transcript: lnc-SLC6A12-2:5

Basic information

LNCipedia transcript ID: lnc-SLC6A12-2:5 
LNCipedia gene ID: lnc-SLC6A12-2
Location (hg38): chr12:157578-182408
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 9699 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000256540.1|MICT00000071210.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 246.2439 coding 
CPAT coding probability 41.21% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC6A12-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC6A12-2:5
5.0 lnc-SLC6A12-2:5
5.1 lnc-CHD4-127:1
5.2 lnc-SLC6A12-2:5