Transcript: lnc-SLC6A12-2:7

Basic information

LNCipedia transcript ID: lnc-SLC6A12-2:7 
LNCipedia gene ID: lnc-SLC6A12-2
Location (hg38): chr12:164620-182408
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3255 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000256540.1|ENCT00000097917.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 246.2439 coding 
CPAT coding probability 3.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC6A12-2:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC6A12-2:7
5.0 lnc-SLC6A12-2:7
5.1 lnc-CHD4-127:3
5.2 lnc-SLC6A12-2:7