Transcript: lnc-SPARCL1-1:4

Basic information

LNCipedia transcript ID: lnc-SPARCL1-1:4 
LNCipedia gene ID: lnc-SPARCL1-1
Ensembl Gene ID: ENSG00000249001
Ensembl Transcript ID: ENST00000506814
Location (hg38): chr4:87657106-87660796
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 591 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506814.1; RP11-742B18.1-004; OTTHUMT00000363601.1; NONHSAT097320
Alternative gene names: ENSG00000249001.1; RP11-742B18.1; OTTHUMG00000161060.1; ENSG00000249001.5; AC093895.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -270.865 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPARCL1-1:4 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPARCL1-1:4
4.0 lnc-SPARCL1-1:4
4.1 lnc-SPARCL1-1:4
5.0 lnc-SPARCL1-1:4
5.1 lnc-SPARCL1-8:8
5.2 lnc-SPARCL1-1:4