Transcript: lnc-SPARCL1-1:6

Basic information

LNCipedia transcript ID: lnc-SPARCL1-1:6 
LNCipedia gene ID: lnc-SPARCL1-1
Location (hg38): chr4:87566696-87732414
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2285 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000249001.1|MICT00000267814.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -46.2824 non-coding 
CPAT coding probability 4.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPARCL1-1:6 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SPARCL1-1:6
5.0 lnc-SPARCL1-1:6
5.1 lnc-SPARCL1-8:3
5.2 lnc-SPARCL1-1:6