Transcript: lnc-SPATA19-9:3

Basic information

LNCipedia transcript ID: lnc-SPATA19-9:3 
LNCipedia gene ID: lnc-SPATA19-9
Location (hg38): chr11:133798040-133810500
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2826 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000530621; ENST00000530621.1; RP11-448P19.1-002; OTTHUMT00000393280.1; NONHSAT025214
Alternative gene names: ENSG00000255258; RP11-448P19.1; ENSG00000255258.1; OTTHUMG00000167119.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.4996 non-coding 
CPAT coding probability 7.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA19-9:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPATA19-1:3
3.1 lnc-SPATA19-1:3
4.0 lnc-SPATA19-1:3
4.1 lnc-SPATA19-1:3
5.0 lnc-SPATA19-1:3
5.1 lnc-IGSF9B-7:3
5.2 lnc-SPATA19-9:3