Transcript: lnc-SPATA19-9:4

Basic information

LNCipedia transcript ID: lnc-SPATA19-9:4 
LNCipedia gene ID: lnc-SPATA19-9
Ensembl Gene ID: ENSG00000255258
Ensembl Transcript ID: ENST00000526254
RefSeq ID: NR_120444
Location (hg38): chr11:133783671-133810376
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 975 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000526254; ENST00000526254.1; RP11-448P19.1-001; OTTHUMT00000393279.1; NONHSAT025212; NR_120444; NR_120444.1
Alternative gene names: ENSG00000255258; RP11-448P19.1; ENSG00000255258.1; OTTHUMG00000167119.1; ENSG00000255258.2; AP001979.2; LOC646522


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.9257 non-coding 
CPAT coding probability 3.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA19-9:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPATA19-1:4
3.1 lnc-SPATA19-1:4
4.0 lnc-SPATA19-1:4
4.1 lnc-SPATA19-1:4
5.0 lnc-SPATA19-1:4
5.1 lnc-IGSF9B-7:4
5.2 lnc-SPATA19-9:4