Transcript: lnc-SPATA31A7-14:1

Basic information

LNCipedia transcript ID: lnc-SPATA31A7-14:1 
LNCipedia gene ID: lnc-SPATA31A7-14
Ensembl Gene ID: ENSG00000226007
Ensembl Transcript ID: ENST00000450704
Location (hg38): chr9:62532337-62534724
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1549 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450704; ENST00000450704.1; RP11-211N8.2-002; OTTHUMT00000036979.1; NONHSAT131481
Alternative gene names: ENSG00000226007; RP11-211N8.2; ENSG00000226007.1; OTTHUMG00000013217.1; ENSG00000226007.2; BX005266.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.8041 non-coding 
CPAT coding probability 18.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA31A7-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM27D1.1-1:1
3.1 lnc-FAM27D1.1-2:1
4.0 lnc-FAM27D1.1-2:1
4.1 lnc-FAM27D1.1-2:1
5.0 lnc-FAM27D1.1-2:1
5.1 lnc-ZNF658-60:1
5.2 lnc-SPATA31A7-14:1