Transcript: lnc-SPATA31A7-14:4

Basic information

LNCipedia transcript ID: lnc-SPATA31A7-14:4 
LNCipedia gene ID: lnc-SPATA31A7-14
Location (hg38): chr9:62532404-62535056
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2539 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000446626; ENST00000446626.1; RP11-211N8.2-001; OTTHUMT00000036978.1; NONHSAT131482
Alternative gene names: ENSG00000226007; RP11-211N8.2; ENSG00000226007.1; OTTHUMG00000013217.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.2146 non-coding 
CPAT coding probability 14.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA31A7-14:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM27D1.1-1:2
3.1 lnc-FAM27D1.1-2:2
4.0 lnc-FAM27D1.1-2:2
4.1 lnc-FAM27D1.1-2:2
5.0 lnc-FAM27D1.1-2:2
5.1 lnc-ZNF658-60:4
5.2 lnc-SPATA31A7-14:4