Transcript: lnc-SPRED2-1:12

Basic information

LNCipedia transcript ID: lnc-SPRED2-1:12 
LNCipedia gene ID: lnc-SPRED2-1
Ensembl Gene ID: ENSG00000234255
Ensembl Transcript ID: ENST00000597541
Location (hg38): chr2:65439888-65456512
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1080 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000597541.5
Alternative gene names: ENSG00000234255.8; AC012370.3; AC012370.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -20.4395 non-coding 
CPAT coding probability 3.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPRED2-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SPRED2-1:12
4.1 lnc-SPRED2-1:12
5.0 lnc-SPRED2-1:12
5.1 lnc-GKN2-71:6
5.2 lnc-SPRED2-1:12