Transcript: lnc-SRP9-1:3

Basic information

LNCipedia transcript ID: lnc-SRP9-1:3 
LNCipedia gene ID: lnc-SRP9-1
Location (hg38): chr1:225700716-225716363
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 709 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001307; NONHSAT009846
Alternative gene names: XLOC_000587; linc-SRP9-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.2044 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRP9-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SRP9-1:2
3.1 lnc-SRP9-1:3
4.0 lnc-SRP9-1:3
4.1 lnc-SRP9-1:3
5.0 lnc-SRP9-1:3
5.1 lnc-ZNF678-66:7
5.2 lnc-SRP9-1:3