Transcript: lnc-ST7L-2:1

Basic information

LNCipedia transcript ID: lnc-ST7L-2:1 
LNCipedia gene ID: lnc-ST7L-2
Ensembl Gene ID: ENSG00000231246
Ensembl Transcript ID: ENST00000427290
Location (hg38): chr1:112177234-112360528
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427290; ENST00000427290.1; RP5-965F6.2-001; OTTHUMT00000033693.1; NONHSAT005224
Alternative gene names: ENSG00000231246; RP5-965F6.2; ENSG00000231246.1; OTTHUMG00000012183.1; AL445426.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.624 non-coding 
CPAT coding probability 11.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST7L-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ST7L-1:1
3.1 lnc-ST7L-2:1
4.0 lnc-ST7L-2:1
4.1 lnc-ST7L-2:1
5.0 lnc-ST7L-2:1
5.1 lnc-DENND2D-20:7
5.2 lnc-ST7L-2:1