Transcript: lnc-SYTL3-2:3

Basic information

LNCipedia transcript ID: lnc-SYTL3-2:3 
LNCipedia gene ID: lnc-SYTL3-2
Ensembl Gene ID: ENSG00000203711
Ensembl Transcript ID: ENST00000643288
Location (hg38): chr6:158870140-158919105
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 979 bp
Exons: 5
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000643288.1
Alternative gene names: ENSG00000203711.12; C6orf99


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -65.6198 non-coding 
CPAT coding probability 70.57% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SYTL3-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SYTL3-2:3
5.1 lnc-SYTL3-2:3
5.2 lnc-SYTL3-2:3