Transcript: lnc-SYTL3-2:9

Basic information

LNCipedia transcript ID: lnc-SYTL3-2:9 
LNCipedia gene ID: lnc-SYTL3-2
Ensembl Gene ID: ENSG00000203711
Ensembl Transcript ID: ENST00000608817
Location (hg38): chr6:158895217-158910352
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 536 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608817.2
Alternative gene names: ENSG00000203711.11; C6orf99; ENSG00000203711.12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -1382.6171 non-coding 
CPAT coding probability 25.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYTL3-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C6orf99-2:4
4.1 lnc-C6orf99-2:4
5.0 lnc-C6orf99-2:4
5.1 lnc-SYTL3-2:5
5.2 lnc-SYTL3-2:9