Transcript: lnc-TACC2-10:1

Basic information

LNCipedia transcript ID: lnc-TACC2-10:1 
LNCipedia gene ID: lnc-TACC2-10
Location (hg38): chr10:121928533-121952485
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1250 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA182:1
Alternative gene names: ENST00000437593


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -17.4598 non-coding 
CPAT coding probability 8.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TACC2-10:1 yes no no no

Available literature

  1. Luo (2015), Epigenetic regulation of lncRNA connects ubiquitin-proteasome system with infection-inflammation in preterm births and preterm premature rupture of membranes., BMC Pregnancy Childbirth


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 ATE1-AS1:4
4.1 ATE1-AS1:4
5.0 ATE1-AS1:4
5.1 lnc-EDRF1-82:1
5.2 lnc-TACC2-10:1