Transcript: lnc-TAF15-1:1

Basic information

LNCipedia transcript ID: lnc-TAF15-1:1 
LNCipedia gene ID: lnc-TAF15-1
Ensembl Gene ID: ENSG00000270240
Ensembl Transcript ID: ENST00000605548
Location (hg38): chr17:35868967-35885863
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 662 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413928.1; AC015849.2-001; OTTHUMT00000256094.1; NONHSAT053129; ENST00000605548.1
Alternative gene names: ENSG00000237805.1; AC015849.2; OTTHUMG00000132737.1; ENSG00000270240.2; AC015849.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.814 non-coding 
CPAT coding probability 9.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAF15-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAF15-1:1
4.0 lnc-TAF15-1:1
4.1 lnc-TAF15-1:1
5.0 lnc-TAF15-1:1
5.1 lnc-RPL19-71:1
5.2 lnc-TAF15-1:1