Transcript: lnc-TGFBRAP1-4:1

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-4:1 
LNCipedia gene ID: lnc-TGFBRAP1-4
Location (hg38): chr2:104936411-105038496
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 472 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000456519.1; AC010884.1-001; OTTHUMT00000329368.1; NONHSAT072967
Alternative gene names: ENSG00000224509.1; AC010884.1; OTTHUMG00000153077.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.414 non-coding 
CPAT coding probability 17.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBRAP1-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGFBRAP1-4:1
4.0 lnc-TGFBRAP1-4:1
4.1 lnc-TGFBRAP1-4:1
5.0 lnc-TGFBRAP1-4:1
5.1 lnc-AFF3-74:4
5.2 lnc-TGFBRAP1-4:1