Transcript: lnc-TGFBRAP1-4:2

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-4:2 
LNCipedia gene ID: lnc-TGFBRAP1-4
Ensembl Gene ID: ENSG00000224509
Ensembl Transcript ID: ENST00000456519
RefSeq ID: NR_110603
Location (hg38): chr2:104936241-105038496
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 642 bp
Exons: 3
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110603; ENST00000456519.2; NR_110603.1
Alternative gene names: ENSG00000224509.2; AC010884.1; LOC102724691


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -49.414 non-coding 
CPAT coding probability 17.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBRAP1-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGFBRAP1-4:2
4.0 lnc-TGFBRAP1-4:2
4.1 lnc-TGFBRAP1-4:2
5.0 lnc-TGFBRAP1-4:2
5.1 lnc-AFF3-74:5
5.2 lnc-TGFBRAP1-4:2