Transcript: lnc-TGFBRAP1-4:5

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-4:5 
LNCipedia gene ID: lnc-TGFBRAP1-4
Location (hg38): chr2:105035072-105038505
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3179 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224509.1|ENCT00000245992.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.6484 non-coding 
CPAT coding probability 15.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBRAP1-4:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TGFBRAP1-4:5
5.0 lnc-TGFBRAP1-4:5
5.1 lnc-AFF3-74:3
5.2 lnc-TGFBRAP1-4:5