Transcript: lnc-THAP10-3:1

Basic information

LNCipedia transcript ID: lnc-THAP10-3:1 
LNCipedia gene ID: lnc-THAP10-3
Location (hg38): chr15:71110560-71111427
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 693 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000564862.1; RP11-673C5.4-001; OTTHUMT00000420812.1; NONHSAT047030
Alternative gene names: ENSG00000261746.1; RP11-673C5.4; OTTHUMG00000172837.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -247.9789 non-coding 
CPAT coding probability 9.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THAP10-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-THAP10-3:1
4.0 lnc-THAP10-3:1
4.1 lnc-THAP10-3:1
5.0 lnc-THAP10-3:1
5.1 lnc-PKM-28:1
5.2 lnc-THAP10-3:1