Transcript: lnc-THBS1-7:5

Basic information

LNCipedia transcript ID: lnc-THBS1-7:5 
LNCipedia gene ID: lnc-THBS1-7
Ensembl Gene ID: ENSG00000259423
Ensembl Transcript ID: ENST00000560129
Location (hg38): chr15:39176765-39180048
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 401 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560129.2
Alternative gene names: ENSG00000259423.2; RP11-265N7.2; AC113146.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -166.7317 non-coding 
CPAT coding probability 8.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THBS1-7:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C15orf54-1:5
4.1 lnc-C15orf54-1:5
5.0 lnc-C15orf54-1:5
5.1 lnc-TMEM62-97:5
5.2 lnc-THBS1-7:5