Transcript: lnc-TP53TG3-4:3

Basic information

LNCipedia transcript ID: lnc-TP53TG3-4:3 
LNCipedia gene ID: lnc-TP53TG3-4
Ensembl Gene ID: ENSG00000260402
Ensembl Transcript ID: ENST00000568730
Location (hg38): chr16:32262908-32263787
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 425 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568730.1; RP11-56L13.1-002; OTTHUMT00000432552.1
Alternative gene names: ENSG00000260402.1; RP11-56L13.1; OTTHUMG00000176123.2; AC133485.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.2734 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TP53TG3-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TP53TG3-4:3
4.0 lnc-TP53TG3-4:3
4.1 lnc-TP53TG3-4:3
5.0 lnc-TP53TG3-4:3
5.1 lnc-SULT1A2-137:4
5.2 lnc-TP53TG3-4:3